Workshops

Workshops are held online on 1:1 or in small groups on flexible dates.

Topics/levels can be adapted, depending on your need. Please contact me for any R / NGS data analysis workshop request.

For beginners (three ~2-hour sessions on three consecutive days)

Get comfortable using R and RStudio while analysing a dataset, from start to finish.

Learn how to get started with R, load libraries, read in tabular data, generate and modify R objects, manipulate datasets and visualize the results with ggplot.

Is this workshop for you?

This workshop is intended for researchers/PhD students in biosciences who are not comfortable using R to analyse their own data. You will learn the bascis needed to start with data analysis, including NGS. There is no prerequisites in R or genomics.

Program:

  • DAY 1
    • Presentation of R and RStudio and application examples
    • Creation and manipulation of objects (variables and vectors)
    • Logical subsetting
    • Built-in functions
  • DAY 2
    • Creation of lists and application example (Venn diagrams)
    • Introduction to the example dataset (vcf format)
    • R packages presentation
  • DAY 3
    • Creation and manipulation of data frames
    • ggplot2 application examples (live coding session)


Next available session: March 2025 - dates to be determined

from 10 am to ~12.15 pm (GMT+1 Central Europe)

from 12 pm to ~2.15 pm (GMT+3 Arabia Standard Time)

from 5 pm to ~7.15 pm (GMT+8 Singapore)


Intermediate Level (coming soon)

Learn how to implement your own functions, efficiently manipulate vectors, customize your plots and more. (depending on request)


rmarkdown (coming soon)

Learn how to generate professional and interactive html reports using R.


Shiny (coming soon)

Implement your own Shiny app, and allow your collaborators to explore and visualize your datasets easily.




Made by Clem M

ABN 62 778 900 494

Email:

For beginners

Connect to a Linux server via ssh, understand the file hierarchy structure, write basic bash scripts and implement automated tasks.




Made by Clem M

ABN 62 778 900 494

Email:

RNAseq / DNAseq Analysis (coming soon)

Learn how to pre-process raw data, do QC analysis, align your reads to a reference genome and do basic downstream analysis.




Made by Clem M

ABN 62 778 900 494

Email: