Workshops

Workshops are held online on 1:1 or in small groups on flexible dates.

Topics/levels can be adapted, depending on your need. Please contact me for any R / NGS data analysis workshop request.

R / RStudio

For beginners (two 3.5-hour sessions on two consecutive days)

Get comfortable using R and RStudio while analysing a dataset, from start to finish.

Learn how to get started with R, load libraries, read in data, generate and modify R objects, manipulate datasets and visualise the results with ggplot.


Next available session: 21st and 22nd November 2024

from 9 am to 12.30 (GMT+1 Paris/Berlin time)


Intermediate Level (coming soon)

Learn how to implement your own functions, efficiently manipulate vectors, customize your plots and more. (depending on request)


rmarkdown (coming soon)

Learn how to generate professional and interactive html reports using R.


Shiny (coming soon)

Implement your own Shiny app, and allow your collaborators to explore and visualize your datasets easily.



Made by Clem M

ABN 62 778 900 494

Email:

Linux / MacOS command line

For beginners

Connect to a Linux server via ssh, understand the file hierarchy structure, write basic bash scripts and implement automated tasks.


Data Analysis (coming soon)

Learn how to pre-process raw data, do QC analysis, align your reads to a reference genome and do basic downstream analysis.



Made by Clem M

ABN 62 778 900 494

Email:

Testimonials

I always appreciate student’s feedback and suggestions to improve my content.

Feedback from previous workshops


“Excellent all throughout” (R for beginners workshop - August 2023)

“Keep organising follow up workshop similar to this” (R for beginners workshop - August 2023)

“Keep organising and helping researchers” (R for beginners workshop - August 2023)

“I feel it was run really well” (R for beginners workshop - August 2023)



Made by Clem M

ABN 62 778 900 494

Email:

About me

After a Master in Bioinformatics obtained in 2012 (Bordeaux - France), I worked as a research assistant in molecular biology (ZMBH, Heidelberg - Germany) and medical research (dkfz, Heidelberg - Germany) for 4 years.

I then obtained a PhD in Applied Bioinformatics (UWA, Perth - Australia), focused on NGS analysis, in 2021.

Since then, I work as a bioinformatician in one of the main Australian sequencing facilities. In parallel, I became a consultant in web development and started implementing Shiny apps for a civil engineering company specialized in structural engineering.



In order to offer the best support in helping people perform their own data analysis independently, I became a Carpentries Instructor in 2023. The Carpentries Instructor Training curriculum was originally released in 2016 and is focused on evidence-based teaching practices.

I have a specific interest for data visualisation and generation of user-friendly interfaces to help scientists get a clear overview of every project outcome.



Made by Clem M

ABN 62 778 900 494

Email:

Contact

For any request, please contact me at:




Made by Clem M

ABN 62 778 900 494

Email: