Workshops
Workshops are held online on 1:1 or in small groups on flexible dates.
Topics/levels can be adapted, depending on your need. Please contact me for any R / NGS data analysis workshop request.
For beginners (three ~2-hour sessions on three consecutive days)
Get comfortable using R and RStudio while analysing a dataset, from start to finish.
Learn how to get started with R, load libraries, read in tabular data, generate and modify R objects, manipulate datasets and visualize the results with ggplot.
Is this workshop for you?
This workshop is intended for researchers/PhD students in biosciences who are not comfortable using R to analyse their own data. You will learn the bascis needed to start with data analysis, including NGS. There is no prerequisites in R or genomics.
Program:
- DAY 1
- Presentation of R and RStudio and application examples
- Creation and manipulation of objects (variables and vectors)
- Logical subsetting
- Built-in functions
- DAY 2
- Creation of lists and application example (Venn diagrams)
- Introduction to the example dataset (vcf format)
- R packages presentation
- DAY 3
- Creation and manipulation of data frames
- ggplot2 application examples (live coding session)
Next available session: March 2025 - dates to be determined
from 10 am to ~12.15 pm (GMT+1 Central Europe)
from 12 pm to ~2.15 pm (GMT+3 Arabia Standard Time)
from 5 pm to ~7.15 pm (GMT+8 Singapore)
rmarkdown (coming soon)
Learn how to generate professional and interactive html reports using R.
Shiny (coming soon)
Implement your own Shiny app, and allow your collaborators to explore and visualize your datasets easily.
Made by Clem M
ABN 62 778 900 494
Email: clem@bioinfo-consult.com
For beginners
Connect to a Linux server via ssh, understand the file hierarchy structure, write basic bash scripts and implement automated tasks.
Made by Clem M
ABN 62 778 900 494
Email: clem@bioinfo-consult.com
RNAseq / DNAseq Analysis (coming soon)
Learn how to pre-process raw data, do QC analysis, align your reads to a reference genome and do basic downstream analysis.
Made by Clem M
ABN 62 778 900 494
Email: clem@bioinfo-consult.com
Testimonials
I always appreciate student’s feedback and suggestions to improve my content.
Feedback from previous workshops
“Excellent all throughout” (R for beginners workshop - August 2023)
“Keep organising follow up workshop similar to this” (R for beginners workshop - August 2023)
“Keep organising and helping researchers” (R for beginners workshop - August 2023)
“I feel it was run really well” (R for beginners workshop - August 2023)
Made by Clem M
ABN 62 778 900 494
Email: clem@bioinfo-consult.com
About me
After a Master in Bioinformatics obtained in 2012 (Bordeaux - France), I worked as a research assistant in molecular biology (ZMBH, Heidelberg - Germany) and medical research (dkfz, Heidelberg - Germany) for 4 years.
I then obtained a PhD in Applied Bioinformatics (UWA, Perth - Australia), focused on NGS analysis, in 2021.
Since then, I work as a bioinformatician in one of the main Australian sequencing facilities. In parallel, I became a consultant in web development and started implementing Shiny apps for a civil engineering company specialized in structural engineering.
In order to offer the best support in helping people perform their own data analysis independently, I became a Carpentries Instructor in 2023. The Carpentries Instructor Training curriculum was originally released in 2016 and is focused on evidence-based teaching practices.
I have a specific interest for data visualization and generation of user-friendly interfaces to help scientists get a clear overview of every project outcome.
Made by Clem M
ABN 62 778 900 494
Email: clem@bioinfo-consult.com
Gallery
Data visualization in R is diverse and highly customisable.
Here are some examples I made, mainly using ggplot2:
Made by Clem M
ABN 62 778 900 494
Email: clem@bioinfo-consult.com